Section 65 GST Audit Explained 2025: Don’t Miss These Details!

Introduction to Section 65 GST Audit
Section 65 of the CGST Act is a crucial part of GST compliance that every CA student and finance professional should understand. It outlines the process through which the tax authorities conduct an audit on registered taxpayers. This audit is mandatory to ensure that the taxpayer’s records and returns are in line with the provisions of GST law. In this article, we will explain the details of Section 65 GST audits, including the timeline, procedure, and practical tips for Chartered Accountants (CAs) to navigate this process smoothly.
What is Section 65 of CGST?
Section 65 of the Central Goods and Services Tax (CGST) Act empowers the tax authorities to initiate an audit on any registered taxpayer. The purpose of this audit is to verify the correctness of the returns filed, the tax payments made, and the compliance with the provisions of the GST law.
While many might confuse an audit with an assessment, there’s a key difference. An audit is a review of the taxpayer’s records and transactions to ensure they align with the law, while an assessment is a process where the tax authorities assess the tax liability based on the returns submitted.
Statutory Citation: Section 65(1) of the CGST Act allows the Commissioner or an authorized officer to initiate an audit. It is one of the most significant compliance mechanisms under GST to prevent tax evasion and ensure that businesses remain in alignment with legal requirements.
Why it Matters
A Section 65 audit holds a lot of weight for both the tax authorities and taxpayers, as non-compliance or discrepancies discovered during the audit can lead to penalties under Sections 122 and 125 of the CGST Act. It is essential for businesses to understand and be prepared for this audit.
When & How is Audit Initiated?
The audit process under Section 65 begins when the Commissioner or any authorized officer of the tax department decides to initiate it. The initiation is done by issuing a formal notice. Here’s what you need to know about how it works:
Notice Issuance: The taxpayer will receive an official notice of audit, typically in the format of GST ADT-01 or GST ADT-02. The notice is served at least 15 working days before the scheduled audit.
Role of the Officer: The Commissioner or a designated officer has the authority to initiate and oversee the audit. They will determine the scope, period, and the specific records that need to be examined.
Audit Scope: The officer will inspect all relevant documents, including tax invoices, stock records, Input Tax Credit (ITC) claims, and classifications of goods/services. If discrepancies are found, they can initiate further actions as per Sections 73 and 74.
Timeline of a Section 65 Audit
The timeline for a Section 65 audit is relatively structured but can be extended under certain conditions:
Standard Timeline: The audit must be completed within three months from the date of commencement. However, it is important to note that this timeline can be extended for an additional six months if needed.
Commencement of Audit: The “commencement of audit” refers to the date when the tax authorities begin the audit process. This can be considered the date the auditor starts inspecting the taxpayer’s records, after issuing the GST ADT notice.
Communication of Findings: Once the audit is complete, the tax authorities are required to communicate their findings within 30 days. This is where the taxpayer can take corrective actions or challenge the findings if necessary.
Audit Scope & Rule 101
Section 65 audits cover a wide range of documents and records. The scope includes:
Invoices: Detailed review of sales invoices to check for accuracy in reporting and tax calculation.
Stock Records: A close look at the stock records to ensure no discrepancies between physical and recorded inventory.
Input Tax Credit (ITC): The auditor verifies that the input tax credit claims are correct and have been taken on valid transactions.
Classification of Goods/Services: Ensures that goods or services have been classified correctly for tax purposes.
The procedure is guided by Rule 101 of the CGST Rules, 2017. This rule provides the framework for carrying out the audit, including the role of officers, timelines, and documentation required. It helps streamline the audit process, ensuring transparency and consistency across the board.
CA Checklist – Before, During, and After Audit
For Chartered Accountants, it’s essential to guide their clients through the audit process effectively. Here’s a checklist to help ensure everything is in order:
Pre-Audit
Reconcile GST Returns: Ensure that GST returns (GSTR-1, GSTR-3B) are reconciled with books of accounts.
Organize Documents: Make sure all required documents, such as invoices, stock records, and ITC claims, are well organized and accessible.
During the Audit
Support the Auditor: Provide necessary documents and assist the auditor in their review. Be ready to clarify any issues that arise during the audit process.
Post-Audit
Review the Audit Report: Carefully go through the audit report once it’s shared. If there are discrepancies or errors in the report, challenge them promptly.
Take Corrective Action: If the audit finds any issues, take immediate corrective measures, such as paying outstanding taxes or applying for an appeal if necessary.
FAQ – Quick Answers
Q. Can a Section 65 audit be repeated for the same period?
Yes, Section 65 audits can be repeated if discrepancies are found or if the tax authorities feel that additional scrutiny is required.
Q. How is a Section 65 audit different from a Section 44 audit?
Section 44 audits are typically conducted based on the self-assessment of the taxpayer. Section 65 audits, however, are initiated by the tax authorities and involve a more in-depth review of the taxpayer’s records.
Conclusion
Navigating a Section 65 GST audit requires proactive preparation, a deep understanding of the rules, and a solid strategy to handle any findings. By following the CA checklist and understanding the timelines and consequences, you can ensure a smooth audit process. Keep your records in order, and don’t hesitate to seek professional assistance when needed.